Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EKY04363.1Hypothetical protein; KEGG: shi:Shel_09410 1.2e-08 DNA primase, catalytic core; K02316 DNA primase; Psort location: Cytoplasmic, score: 8.96. (284 aa)    
Predicted Functional Partners:
EKX95911.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
  
  0.807
EKY04361.1
Conjugative transposon TraN protein.
 
    0.806
EKY04360.1
Conjugative transposon TraM protein; Psort location: OuterMembrane, score: 9.49.
 
     0.800
EKY04362.1
Hypothetical protein.
       0.794
EKY04364.1
Conjugative transposon protein TraQ family protein.
       0.720
EKY02076.1
Hypothetical protein; KEGG: tin:Tint_2201 1.0e-05 DNA topoisomerase; Psort location: Cytoplasmic, score: 8.96.
  
     0.689
EKY01008.1
Hypothetical protein; KEGG: tin:Tint_2201 1.0e-12 DNA topoisomerase.
 
    0.677
EKX95907.1
Hypothetical protein; KEGG: tin:Tint_2201 2.2e-12 DNA topoisomerase.
 
    0.657
EKY04365.1
Hypothetical protein; KEGG: pmz:HMPREF0659_A7234 4.8e-42 phage lysozyme; Psort location: Cytoplasmic, score: 8.96.
 
     0.650
EKY03860.1
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
   
 0.644
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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