Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
EKY04320.1KEGG: bmn:BMA10247_0395 3.0e-10 RNA polymerase factor sigma-70 K03088; Belongs to the sigma-70 factor family. ECF subfamily. (183 aa)    
Predicted Functional Partners:
EKY03589.1
Sigma factor regulatory protein, FecR/PupR family; Psort location: CytoplasmicMembrane, score: 9.82.
  
   0.776
EKX96701.1
Sigma factor regulatory protein, FecR/PupR family; Psort location: CytoplasmicMembrane, score: 7.88.
  
   0.763
EKY02985.1
Sigma factor regulatory protein, FecR/PupR family; Psort location: CytoplasmicMembrane, score: 9.82.
  
   0.739
EKY03587.1
SusD family protein; Psort location: Cytoplasmic, score: 8.96.
  
 
   0.643
EKY03626.1
Hypothetical protein.
  
 
   0.611
EKY00755.1
SusD family protein.
  
 
   0.590
EKY04319.1
Hepatitis C virus non-structural protein E2/NS1; KEGG: lpl:lp_3471 1.6e-18 ram1; alpha-L-rhamnosidase (putative) K05989.
       0.572
EKY03588.1
TonB-dependent receptor plug domain protein; KEGG: ccv:CCV52592_1977 2.2e-05 sulfate/thiosulfate import ATP-binding protein CysA 2 (sulfate-transporting ATPase 2); Psort location: OuterMembrane, score: 9.52.
  
     0.570
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.541
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.533
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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