Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EKY04293.1KEGG: pru:PRU_1369 8.2e-79 ribE; riboflavin synthase subunit alpha K00793; Psort location: Cytoplasmic, score: 9.97. (230 aa)    
Predicted Functional Partners:
ribH
6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
 
 0.999
ribBA
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
 0.999
EKX96746.1
KEGG: pru:PRU_2399 5.2e-93 ribD; riboflavin biosynthesis protein RibD K11752; Psort location: Cytoplasmic, score: 9.97.
 
 0.999
EKX98910.1
KEGG: pmz:HMPREF0659_A7207 7.8e-74 ribF; riboflavin biosynthesis protein RibF K11753; Psort location: Cytoplasmic, score: 9.97.
    
 0.933
EKX98909.1
KEGG: fjo:Fjoh_0002 3.0e-17 HAD family hydrolase; K01560 2-haloacid dehalogenase; Psort location: Cytoplasmic, score: 8.96.
   
 
  0.830
EKX98161.1
HAD hydrolase, family IA, variant 1; KEGG: spq:SPAB_05736 7.2e-09 nucleotidase; K08723 5'-nucleotidase; Psort location: Cytoplasmic, score: 8.96.
   
 
  0.594
EKX99604.1
KEGG: bvu:BVU_0533 3.4e-57 acid phosphatase; K09474 acid phosphatase (class A); Psort location: Periplasmic, score: 9.76.
     
  0.573
EKX96145.1
KEGG: coc:Coch_0690 2.0e-98 acid phosphatase K09474; Psort location: Periplasmic, score: 10.00.
     
  0.573
EKY04294.1
Hypothetical protein.
       0.548
EKX98294.1
HAD hydrolase, family IA, variant 3; KEGG: fba:FIC_00887 4.6e-37 hydrolase, haloacid dehalogenase-like family protein; K01560 2-haloacid dehalogenase; Psort location: Cytoplasmic, score: 8.96.
   
 
  0.488
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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