STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKY03919.1Methyltransferase domain protein; KEGG: rha:RHA1_ro03827 1.4e-10 ubiquinone/menaquinone methyltransferase K03183; Psort location: Cytoplasmic, score: 8.96. (187 aa)    
Predicted Functional Partners:
EKY03920.1
TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
       0.623
EKY02957.1
Polyprenyl synthetase; KEGG: pmz:HMPREF0659_A7168 5.1e-118 polyprenyl synthetase; K13789 geranylgeranyl diphosphate synthase, type II; Psort location: Cytoplasmic, score: 9.26.
   
 0.556
EKX96451.1
Polyprenyl synthetase; KEGG: pmz:HMPREF0659_A5037 5.7e-110 polyprenyl synthetase; K02523 octaprenyl diphosphate synthase; Psort location: Cytoplasmic, score: 9.97.
   
 0.556
EKY03303.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
     
  0.528
menA
1,4-dihydroxy-2-naphthoate octaprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily.
    
 0.502
EKX97279.1
Phosphoserine phosphatase SerB.
    
 0.453
EKY03439.1
AMP-binding enzyme; KEGG: mav:MAV_5220 6.4e-47 acyl-CoA synthetase; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.448
EKX99651.1
Vitamin B12 dependent methionine synthase, activation domain protein; KEGG: pdi:BDI_0415 7.1e-53 putative 5-methyltetrahydrofolate--homocysteine methyltransferase; K00548 5-methyltetrahydrofolate--homocysteine methyltransferase; Psort location: Cytoplasmic, score: 9.97.
    
 0.410
EKX99286.1
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
 0.410
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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