Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKY03688.1Fic family protein; KEGG: bpb:bpr_I0644 0.0081 hypothetical protein; K03655 ATP-dependent DNA helicase RecG; Psort location: Cytoplasmic, score: 8.96. (365 aa)    
Predicted Functional Partners:
EKY03687.1
Fic family protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.852
EKY03686.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.768
EKY03690.1
DNA-binding helix-turn-helix protein.
       0.654
EKY03689.1
KEGG: mho:MHO_2040 0.00027 hypothetical protein; K02340 DNA polymerase III subunit delta; Psort location: Cytoplasmic, score: 8.96.
       0.639
EKY03691.1
Hypothetical protein.
       0.453
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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