Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKY03624.1PKD domain protein; Psort location: OuterMembrane, score: 9.52. (498 aa)    
Predicted Functional Partners:
EKY03623.1
Redoxin family protein; KEGG: cby:CLM_0322 1.3e-09 antioxidant, AhpC/TSA family; Psort location: CytoplasmicMembrane, score: 9.97.
       0.773
EKY03626.1
Hypothetical protein.
       0.772
EKY03625.1
Hypothetical protein.
       0.727
EKY03627.1
TonB-dependent receptor plug domain protein; KEGG: sde:Sde_2885 0.00027 histidine kinase.
       0.667
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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