STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKY03589.1Sigma factor regulatory protein, FecR/PupR family; Psort location: CytoplasmicMembrane, score: 9.82. (313 aa)    
Predicted Functional Partners:
EKY04320.1
KEGG: bmn:BMA10247_0395 3.0e-10 RNA polymerase factor sigma-70 K03088; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.776
EKY03590.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.82.
       0.773
EKY03588.1
TonB-dependent receptor plug domain protein; KEGG: ccv:CCV52592_1977 2.2e-05 sulfate/thiosulfate import ATP-binding protein CysA 2 (sulfate-transporting ATPase 2); Psort location: OuterMembrane, score: 9.52.
 
     0.677
EKY03587.1
SusD family protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.663
EKY03677.1
Hypothetical protein.
  
 
 0.583
EKY02991.1
RNA polymerase sigma-70 factor; KEGG: chu:CHU_3562 1.1e-14 rpoE; ECF subfamily RNA polymerase sigma factor K03088; Psort location: Cytoplasmic, score: 9.97; Belongs to the sigma-70 factor family. ECF subfamily.
  
   0.500
EKY00755.1
SusD family protein.
  
     0.468
EKY03626.1
Hypothetical protein.
  
     0.460
EKY00754.1
TonB-dependent receptor plug domain protein; Psort location: OuterMembrane, score: 9.52.
  
    0.453
EKY03627.1
TonB-dependent receptor plug domain protein; KEGG: sde:Sde_2885 0.00027 histidine kinase.
  
    0.452
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.