Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKY03527.1Hypothetical protein. (136 aa)    
Predicted Functional Partners:
EKY03528.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
    0.840
EKY03526.1
KEGG: shn:Shewana3_0763 1.3e-14 ECF subfamily RNA polymerase sigma-24 factor K03088; Psort location: Cytoplasmic, score: 9.26; Belongs to the sigma-70 factor family. ECF subfamily.
       0.816
EKY03525.1
Hypothetical protein; KEGG: ddd:Dda3937_03653 3.6e-19 ycbB; putative carboxypeptidase; Psort location: Cytoplasmic, score: 8.96.
       0.786
EKY03524.1
Hypothetical protein.
       0.689
rnz
Putative ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.
       0.470
EKY03529.1
Transporter, SSS family; KEGG: apb:SAR116_0788 1.1e-05 Na+/solute symporter (Ssf family); Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.470
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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