Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKY03443.1Hypothetical protein; KEGG: fsu:Fisuc_1622 8.3e-06 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase K07259; Psort location: CytoplasmicMembrane, score: 9.82. (281 aa)    
Predicted Functional Partners:
EKY03445.1
Oxidoreductase, NAD-binding domain protein; KEGG: swo:Swol_0706 1.3e-25 putative oxidoreductase; K13020 UDP-D-GlcNAcA oxidase.
 
     0.835
EKY03444.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.52.
       0.825
EKX99113.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.755
EKY04268.1
Hypothetical protein; KEGG: rcu:RCOM_0229730 1.4e-33 beta-glucosidase, putative; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.749
EKX96938.1
Serine proteinase inhibitor; KEGG: isc:IscW_ISCW023619 7.3e-39 secreted salivary gland peptide, putative; Belongs to the serpin family.
    
  0.746
EKX98167.1
Helicase protein; KEGG: lsp:Bsph_0793 3.8e-17 ATP-dependent helicase YqhH; Psort location: Cytoplasmic, score: 8.96.
   
 0.739
EKY00990.1
Hypothetical protein; KEGG: rcu:RCOM_0229730 2.0e-49 beta-glucosidase, putative; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.736
glyA
Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
    
 0.560
EKX99661.1
Chain length determinant protein; KEGG: bpm:BURPS1710b_A1960 4.8e-05 putative transport-related membrane protein K00903.
  
     0.512
EKY02779.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.511
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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