Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKY03321.1Conjugative transposon TraJ protein; Psort location: CytoplasmicMembrane, score: 10.00. (342 aa)    
Predicted Functional Partners:
EKY03322.1
Conjugative transposon TraK protein; Psort location: Cytoplasmic, score: 8.96.
 
   
 0.957
EKY03320.1
Hypothetical protein.
 
     0.951
EKY04218.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
   
 0.845
EKY04361.1
Conjugative transposon TraN protein.
 
     0.797
EKY04360.1
Conjugative transposon TraM protein; Psort location: OuterMembrane, score: 9.49.
 
     0.796
EKY04219.1
Conjugative transposon protein TraF; Psort location: CytoplasmicMembrane, score: 9.82.
 
     0.796
EKY04220.1
Conjugative transposon protein TraE; KEGG: fjo:Fjoh_1975 0.0071 potassium-transporting ATPase subunit A K01546; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.796
EKY04217.1
Conjugative transposon protein TraI family protein.
 
     0.793
EKY04409.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.784
EKY04410.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.784
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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