Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKY03263.1Tetratricopeptide repeat protein. (931 aa)    
Predicted Functional Partners:
EKX99555.1
Hypothetical protein.
  
 
 0.944
EKY03262.1
PglZ domain protein; KEGG: mct:MCR_0763 4.4e-12 narL; two-component system nitrate/nitrite response regulator NarL K07684; Psort location: Cytoplasmic, score: 9.97.
 
 
 0.925
EKX96858.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
  
 
 
 0.920
EKY00010.1
Outer membrane protein.
  
 
   0.832
EKX99874.1
PorT family protein.
  
   
 0.823
EKY02937.1
OmpA family protein; KEGG: apb:SAR116_2300 3.3e-09 peptidoglycan-associated lipoprotein K03640; Psort location: OuterMembrane, score: 9.93.
 
 0.813
EKX98297.1
Gliding motility-associated protein GldM.
  
   
 0.791
EKX98296.1
Gliding motility-associated protein GldN.
  
   
 0.789
EKX98298.1
Gliding motility-associated protein GldL.
  
   
 0.786
EKY03079.1
KEGG: chu:CHU_3654 0.00018 hypothetical protein K01238.
  
 
   0.775
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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