Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKY03305.1Hypothetical protein; KEGG: lxx:Lxx21650 0.0090 signal peptidase I; K13280 signal peptidase, endoplasmic reticulum-type. (161 aa)    
Predicted Functional Partners:
EKY03306.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.958
EKY03304.1
Hypothetical protein.
 
     0.955
EKX96096.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.795
EKX98456.1
KEGG: rxy:Rxyl_0185 3.6e-53 ABC transporter related; K11085 ATP-binding cassette, subfamily B, bacterial MsbA; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.758
EKX99583.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.719
EKX96154.1
Hypothetical protein.
  
   
 0.708
EKY03307.1
Hypothetical protein.
       0.691
EKY03303.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
       0.679
EKY00497.1
Hypothetical protein.
  
     0.650
EKY03444.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.52.
  
     0.647
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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