STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKY02938.1Transporter, MotA/TolQ/ExbB proton channel family protein; KEGG: apb:SAR116_2296 1.8e-05 biopolymer transport protein K03562; Psort location: CytoplasmicMembrane, score: 10.00. (283 aa)    
Predicted Functional Partners:
EKY02941.1
Hypothetical protein.
 
 
 0.979
EKY02940.1
Hypothetical protein.
 
 
 0.976
EKY02939.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.840
EKX98754.1
Hypothetical protein.
   
 
 0.752
EKX98755.1
Hypothetical protein.
   
 
 0.752
EKY02956.1
TonB-dependent receptor; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
   0.714
EKX99585.1
Hypothetical protein.
  
     0.707
EKY02937.1
OmpA family protein; KEGG: apb:SAR116_2300 3.3e-09 peptidoglycan-associated lipoprotein K03640; Psort location: OuterMembrane, score: 9.93.
  
  
 0.686
EKY02942.1
KEGG: apb:SAR116_2220 1.4e-12 transcriptional regulator, AsnC family; Psort location: Cytoplasmic, score: 9.97.
     
 0.591
EKY03613.1
TonB-dependent receptor.
  
   0.589
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.