Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EKY02956.1TonB-dependent receptor; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (237 aa)    
Predicted Functional Partners:
EKY02957.1
Polyprenyl synthetase; KEGG: pmz:HMPREF0659_A7168 5.1e-118 polyprenyl synthetase; K13789 geranylgeranyl diphosphate synthase, type II; Psort location: Cytoplasmic, score: 9.26.
       0.805
EKY02958.1
Hydrolase, TatD family; KEGG: pru:PRU_1824 3.6e-85 NUDIX family hydrolase; K03424 TatD DNase family protein; Psort location: Cytoplasmic, score: 9.97.
       0.805
EKY02941.1
Hypothetical protein.
 
   0.745
EKY02940.1
Hypothetical protein.
 
   0.724
EKY02938.1
Transporter, MotA/TolQ/ExbB proton channel family protein; KEGG: apb:SAR116_2296 1.8e-05 biopolymer transport protein K03562; Psort location: CytoplasmicMembrane, score: 10.00.
 
   0.714
EKY02955.1
Outer membrane insertion signal domain protein.
  
    0.668
cmk
Cytidylate kinase; KEGG: pru:PRU_1828 2.6e-91 cmk; cytidylate kinase K00945; Psort location: Cytoplasmic, score: 9.97.
    
  0.657
EKY02937.1
OmpA family protein; KEGG: apb:SAR116_2300 3.3e-09 peptidoglycan-associated lipoprotein K03640; Psort location: OuterMembrane, score: 9.93.
   
 
 0.638
EKY02342.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.562
EKX98753.1
Transporter, MotA/TolQ/ExbB proton channel family protein; KEGG: apb:SAR116_2296 7.9e-07 biopolymer transport protein K03562; Psort location: CytoplasmicMembrane, score: 10.00.
  
   0.529
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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