Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKY02842.1TonB-dependent receptor. (792 aa)    
Predicted Functional Partners:
EKX99567.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.789
EKY03075.1
Hypothetical protein; Psort location: Extracellular, score: 9.64.
  
     0.774
EKX96554.1
Hypothetical protein; KEGG: dfe:Dfer_0792 0.0011 histidine kinase.
  
     0.770
EKY02955.1
Outer membrane insertion signal domain protein.
  
     0.766
EKX96859.1
Hypothetical protein.
  
     0.766
EKX99555.1
Hypothetical protein.
  
     0.762
EKX96858.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
  
     0.760
EKY03132.1
Hypothetical protein.
  
     0.755
EKY03263.1
Tetratricopeptide repeat protein.
  
     0.754
EKX99874.1
PorT family protein.
  
     0.754
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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