Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EKY01818.1Endonuclease/exonuclease/phosphatase family protein. (363 aa)    
Predicted Functional Partners:
EKY01819.1
Peptidase, S54 family; KEGG: pmz:HMPREF0659_A6317 4.8e-90 peptidase, S54 family; Psort location: CytoplasmicMembrane, score: 10.00.
       0.825
EKX99613.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.707
EKY00512.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.691
EKY02890.1
DoxX family protein; KEGG: pmz:HMPREF0659_A5471 3.8e-136 tpiA; triose-phosphate isomerase; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.685
EKX96865.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.676
EKY03886.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.52.
  
     0.675
EKY04297.1
Hypothetical protein.
  
     0.666
EKX99118.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.644
secD
Export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
       0.634
EKX96966.1
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
    
   0.631
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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