Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EKY01580.1KEGG: gfo:GFO_0229 5.0e-06 M23 family peptidase K01417. (549 aa)    
Predicted Functional Partners:
EKY01579.1
Peptidase, C69 family; KEGG: ddd:Dda3937_03172 7.6e-44 dipeptidase-related protein; Psort location: CytoplasmicMembrane, score: 9.86.
       0.781
EKY03811.1
Peptidase, M56 family; KEGG: scl:sce7487 9.4e-07 ftsI3; penicillin-binding transpeptidase; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
  0.590
EKY01577.1
HD domain protein; KEGG: fba:FIC_01915 1.3e-85 deoxyguanosinetriphosphate triphosphohydrolase K06885; Psort location: Cytoplasmic, score: 8.96.
       0.523
pyrF
KEGG: pmz:HMPREF0659_A6727 4.6e-108 pyrF; orotidine 5'-phosphate decarboxylase K01591; Belongs to the OMP decarboxylase family. Type 2 subfamily.
       0.523
EKY01581.1
Hypothetical protein.
       0.492
lspA
Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
     
 0.488
EKY01582.1
Hypothetical protein.
       0.486
EKY01584.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
    0.486
ileS
isoleucine--tRNA ligase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily.
       0.477
EKY02890.1
DoxX family protein; KEGG: pmz:HMPREF0659_A5471 3.8e-136 tpiA; triose-phosphate isomerase; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.472
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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