Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKY01582.1Hypothetical protein. (291 aa)    
Predicted Functional Partners:
lspA
Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
       0.816
EKY01584.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.816
ileS
isoleucine--tRNA ligase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily.
       0.793
EKY02645.1
DNA-binding protein HU; KEGG: sce:YNL250W 0.0055 RAD50; Rad50p K10866; Psort location: Cytoplasmic, score: 8.96; overlaps another CDS with the same product name; Belongs to the bacterial histone-like protein family.
  
     0.771
EKX96874.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.756
EKY02333.1
Tetratricopeptide repeat protein; KEGG: bcy:Bcer98_3248 0.0037 pheT; phenylalanyl-tRNA synthetase subunit beta K01890.
  
     0.753
EKY04297.1
Hypothetical protein.
  
     0.752
EKY02332.1
Hypothetical protein.
  
     0.750
EKY03886.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.52.
  
     0.748
EKY02654.1
Hypothetical protein.
  
     0.744
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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