Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EKY01490.1Radical SAM domain protein; KEGG: mru:mru_1965 2.2e-37 pflA2; pyruvate formate-lyase-activating enzyme PflA2; Psort location: Cytoplasmic, score: 9.97. (217 aa)    
Predicted Functional Partners:
EKX97285.1
Formate C-acetyltransferase.
 
 
 0.911
EKY01489.1
Hypothetical protein.
       0.732
EKY03884.1
Pyruvate synthase; KEGG: pmz:HMPREF0659_A5561 0. nifJ; pyruvate synthase K03737; Psort location: Cytoplasmic, score: 8.96.
     
 0.569
EKY01488.1
Xaa-His dipeptidase; KEGG: pru:PRU_1551 1.9e-175 pepD_2; Xaa-His dipeptidase K01270; Psort location: Cytoplasmic, score: 8.96.
       0.554
EKY01487.1
Hypothetical protein; KEGG: cwo:Cwoe_1613 7.1e-09 phosphatidylinositol alpha-mannosyltransferase K08256; Psort location: CytoplasmicMembrane, score: 10.00.
       0.539
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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