Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKY01069.1Hypothetical protein; KEGG: cbt:CLH_2555 0.0033 lepB; signal peptidase I K03100; Psort location: Cytoplasmic, score: 8.96. (179 aa)    
Predicted Functional Partners:
EKX97037.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
 
     0.859
EKY02078.1
Hypothetical protein.
 
     0.678
EKY01816.1
Hypothetical protein.
  
     0.621
EKY02853.1
Phage tail component protein.
  
    0.602
EKY00006.1
Hypothetical protein; Psort location: Extracellular, score: 9.64.
  
     0.601
EKX97484.1
Hypothetical protein.
  
     0.574
EKY03427.1
Hypothetical protein.
  
     0.565
EKY03886.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.52.
  
     0.562
EKY03269.1
Tetratricopeptide repeat protein; KEGG: tet:TTHERM_00391570 1.7e-09 DNA polymerase family B containing protein K02350; Psort location: Cytoplasmic, score: 8.96.
  
     0.545
EKY01231.1
Hypothetical protein; Psort location: Extracellular, score: 9.64.
  
     0.545
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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