Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EKY00564.1TonB-dependent receptor plug domain protein. (1131 aa)    
Predicted Functional Partners:
EKY00565.1
SusD family protein.
 
 
   0.949
EKY00566.1
Fasciclin domain protein.
 
     0.933
EKY00567.1
Fasciclin domain protein.
 
     0.924
EKY00569.1
Hypothetical protein.
 
     0.920
EKX99871.1
SusD family protein.
  
 
   0.771
EKY00568.1
TonB-dependent receptor plug domain protein.
 
    
0.760
EKY00563.1
Hypothetical protein.
       0.737
EKY00043.1
SusD family protein.
  
 
   0.734
EKY04095.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
  
 
   0.700
EKY04047.1
SusD family protein; Psort location: Cytoplasmic, score: 8.96.
  
 
   0.692
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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