Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKY00584.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (719 aa)    
Predicted Functional Partners:
EKY00583.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.825
EKY00585.1
ABC transporter, ATP-binding protein; KEGG: ttu:TERTU_4674 4.6e-69 macrolide export ATP-binding/permease protein MacB K02003; Psort location: CytoplasmicMembrane, score: 9.99.
       0.556
EKY00581.1
CAAX amino terminal protease family protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.434
EKY00582.1
Hypothetical protein; KEGG: aba:Acid345_2787 2.2e-06 carboxymethylenebutenolidase K01061.
       0.434
EKY00586.1
Efflux ABC transporter, permease protein; KEGG: lbf:LBF_2923 1.2e-28 ABC transporter ATP-binding protein; K05685 macrolide transport system ATP-binding/permease protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.406
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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