Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EKY00509.1Hypothetical protein; KEGG: xla:495064 9.3e-06 rad50; RAD50 homolog; K10866 DNA repair protein RAD50; Psort location: Cytoplasmic, score: 9.97. (325 aa)    
Predicted Functional Partners:
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
  
    0.905
nadD
Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
 
    0.850
EKY00510.1
Universal bacterial protein YeaZ; KEGG: gfo:GFO_0202 4.0e-38 M22 family peptidase K01417; Psort location: Cytoplasmic, score: 8.96.
 
     0.733
EKY04286.1
Sigma-54 interaction domain protein; KEGG: reh:H16_B2325 4.5e-58 norR2; anaerobic nitric oxide reductase transcription regulator K12266; Psort location: Cytoplasmic, score: 9.97.
  
     0.445
EKY02104.1
Sigma-70 region 2; KEGG: ctu:Ctu_31640 2.5e-09 rpoE; RNA polymerase sigma factor RpoE K03088; Psort location: Cytoplasmic, score: 9.26; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.424
EKX99494.1
KEGG: pmz:HMPREF0659_A6906 2.0e-233 S1 RNA binding domain protein; K08301 ribonuclease G; Psort location: Cytoplasmic, score: 9.97.
  
     0.421
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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