STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKY00512.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (197 aa)    
Predicted Functional Partners:
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
 
    0.855
rimM
16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.
 
     0.840
EKX99613.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.763
EKX99118.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.754
EKY03892.1
Hypothetical protein; KEGG: tte:TTE1510 7.1e-05 rpoZ; DNA-directed RNA polymerase subunit omega K03060.
  
     0.741
EKY00516.1
Putative RIP metalloprotease RseP; KEGG: pru:PRU_2924 1.1e-172 putative membrane-associated zinc metalloprotease; K11749 regulator of sigma E protease; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.732
EKY02891.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.708
dxr
1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.
       0.706
EKX99536.1
KEGG: abu:Abu_1717 0.00065 hsdM; type I restriction-modification system, M subunit, putative.
  
     0.704
EKY01818.1
Endonuclease/exonuclease/phosphatase family protein.
  
     0.691
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.