Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKY00451.1Hypothetical protein; KEGG: apb:SAR116_1915 0.0038 tyrosine recombinase XerD K04763. (70 aa)    
Predicted Functional Partners:
EKY04346.1
Hypothetical protein.
  
     0.774
EKY00476.1
Hypothetical protein.
  
     0.774
EKY00467.1
RteC protein.
  
     0.640
EKY00450.1
Hypothetical protein.
       0.572
EKY03884.1
Pyruvate synthase; KEGG: pmz:HMPREF0659_A5561 0. nifJ; pyruvate synthase K03737; Psort location: Cytoplasmic, score: 8.96.
     
  0.548
EKX95909.1
Hypothetical protein; KEGG: csc:Csac_0882 1.1e-07 DNA primase; K02316 DNA primase; Psort location: Cytoplasmic, score: 8.96.
  
     0.517
EKY03705.1
Relaxase/mobilization nuclease domain protein; KEGG: tin:Tint_2201 3.7e-12 DNA topoisomerase; Psort location: Cytoplasmic, score: 8.96.
  
     0.511
EKY01010.1
Hypothetical protein; KEGG: str:Sterm_2944 1.4e-09 DNA primase; K02316 DNA primase; Psort location: Cytoplasmic, score: 8.96.
  
     0.505
EKY03322.1
Conjugative transposon TraK protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.488
EKY02076.1
Hypothetical protein; KEGG: tin:Tint_2201 1.0e-05 DNA topoisomerase; Psort location: Cytoplasmic, score: 8.96.
  
     0.488
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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