Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EKY00109.1Hypothetical protein. (64 aa)    
Predicted Functional Partners:
EKY00108.1
MGS-like domain protein; KEGG: pru:PRU_1709 5.4e-82 putative IMP cyclohydrolase; K00602 phosphoribosylaminoimidazolecarboxamide formyltransferase.
       0.516
EKY00106.1
KEGG: apb:SAR116_0709 3.6e-05 cell shape-determining protein K03570; Psort location: CytoplasmicMembrane, score: 9.82.
       0.426
EKY00107.1
KEGG: apb:SAR116_0710 1.2e-68 cell shape determining protein MreB/Mrl K03569; Psort location: Cytoplasmic, score: 9.97.
       0.426
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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