STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKY00055.1Putative membrane protein; KEGG: apb:SAR116_2175 8.8e-06 RarD protein, DMT superfamily transporter K05786; Psort location: CytoplasmicMembrane, score: 10.00. (297 aa)    
Predicted Functional Partners:
EKY00056.1
OmpA family protein; KEGG: apb:SAR116_2281 8.8e-16 flagellar motor protein K02557.
     
 0.561
EKX98129.1
Resolvase protein; Psort location: Cytoplasmic, score: 8.96.
  
    0.433
EKY01437.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: dfe:Dfer_1574 2.4e-80 histidine kinase; Psort location: CytoplasmicMembrane, score: 9.99.
 
   
 0.405
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.