Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
EKY00058.1AMP-binding enzyme; KEGG: pru:PRU_1303 1.2e-201 AMP-binding enzyme; K01897 long-chain acyl-CoA synthetase; Psort location: Cytoplasmic, score: 9.97. (555 aa)    
Predicted Functional Partners:
EKY00059.1
AMP-binding enzyme; KEGG: pru:PRU_1303 2.9e-225 AMP-binding enzyme; K01897 long-chain acyl-CoA synthetase; Psort location: CytoplasmicMembrane, score: 9.82.
 
  
 
0.943
EKY03553.1
AMP-binding enzyme; KEGG: pru:PRU_2490 2.1e-231 AMP-binding enzyme; K01897 long-chain acyl-CoA synthetase; Psort location: Cytoplasmic, score: 9.97.
  
  
 
0.877
EKY03439.1
AMP-binding enzyme; KEGG: mav:MAV_5220 6.4e-47 acyl-CoA synthetase; Psort location: Cytoplasmic, score: 9.97.
  
 
  0.640
EKX96221.1
Response regulator receiver domain protein; KEGG: dfe:Dfer_0792 2.5e-148 histidine kinase; Psort location: CytoplasmicMembrane, score: 9.82.
     
 0.484
EKY02829.1
Response regulator receiver domain protein.
     
  0.479
EKX99725.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: aci:ACIAD0595 3.8e-11 putative sensory transduction histidine kinase K00936; Psort location: CytoplasmicMembrane, score: 10.00.
     
  0.479
rplE
Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
    
   0.445
EKY00057.1
Hypothetical protein.
       0.442
rplR
Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
    
   0.442
rplN
Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
    
   0.416
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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