Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EKY00011.1Outer membrane protein; KEGG: hpa:HPAG1_1080 5.6e-05 hypothetical protein; K01553 myosin ATPase; Psort location: Periplasmic, score: 9.84. (166 aa)    
Predicted Functional Partners:
EKY00009.1
Outer membrane protein, OMP85 family; KEGG: apb:SAR116_0511 7.4e-16 surface antigen D15 K07277; Psort location: OuterMembrane, score: 10.00.
 
    0.809
EKY00010.1
Outer membrane protein.
       0.723
EKY00007.1
Hypothetical protein.
   
   0.673
EKY00012.1
Outer membrane protein.
 
    
0.643
EKY00006.1
Hypothetical protein; Psort location: Extracellular, score: 9.64.
 
    0.629
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
       0.614
EKY00008.1
Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
       0.597
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
 
     0.596
EKY02701.1
Hypothetical protein; KEGG: pdi:BDI_0184 2.1e-87 peptidyl-prolyl cis-trans isomerase; K03770 peptidyl-prolyl cis-trans isomerase D.
  
    0.545
EKY00015.1
Efflux ABC transporter, permease protein; KEGG: apb:SAR116_0522 6.4e-31 ABC-type transport system, permease component K09808; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.539
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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