STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKY00016.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00. (294 aa)    
Predicted Functional Partners:
EKY00017.1
Hypothetical protein; KEGG: ddd:Dda3937_04140 0.00068 integral membrane protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.773
guaA
GMP synthase domain protein; Catalyzes the synthesis of GMP from XMP.
    
  0.567
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
       0.452
EKY00015.1
Efflux ABC transporter, permease protein; KEGG: apb:SAR116_0522 6.4e-31 ABC-type transport system, permease component K09808; Psort location: CytoplasmicMembrane, score: 10.00.
       0.452
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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