Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EKY00030.1FtsK/SpoIIIE family protein; KEGG: apb:SAR116_1808 4.3e-89 DNA segregation ATPase FtsK/SpoIIIE K03466; Psort location: CytoplasmicMembrane, score: 10.00. (814 aa)    
Predicted Functional Partners:
EKY00029.1
Outer membrane lipoprotein carrier protein LolA.
  
    0.783
EKY00028.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.764
EKX99501.1
ParB-like protein; KEGG: cti:RALTA_A3100 4.4e-48 parB1; exonuclease involved in chromosome partitioning, ParB protein K03497; Psort location: Cytoplasmic, score: 9.97; Belongs to the ParB family.
  
   
 0.659
EKY00031.1
3'-5' exonuclease; KEGG: pmz:HMPREF0659_A6957 9.1e-64 3'-5' exonuclease; Psort location: Cytoplasmic, score: 8.96.
       0.654
EKY00032.1
Putative 23S rRNA m5C1962 methyltransferase; KEGG: azo:azo0598 6.7e-68 SAM dependent methyl transferase K06969; Psort location: Cytoplasmic, score: 9.97.
       0.613
EKX96865.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
   
 
 0.570
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
 
   
 0.491
tilS
tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.
       0.485
EKY00027.1
TrkA protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.481
xerC-2
Putative tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
     0.481
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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