Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EKY00032.1Putative 23S rRNA m5C1962 methyltransferase; KEGG: azo:azo0598 6.7e-68 SAM dependent methyl transferase K06969; Psort location: Cytoplasmic, score: 9.97. (395 aa)    
Predicted Functional Partners:
EKY00031.1
3'-5' exonuclease; KEGG: pmz:HMPREF0659_A6957 9.1e-64 3'-5' exonuclease; Psort location: Cytoplasmic, score: 8.96.
       0.809
tilS
tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.
       0.634
EKY00030.1
FtsK/SpoIIIE family protein; KEGG: apb:SAR116_1808 4.3e-89 DNA segregation ATPase FtsK/SpoIIIE K03466; Psort location: CytoplasmicMembrane, score: 10.00.
       0.613
EKY00028.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.606
EKY00029.1
Outer membrane lipoprotein carrier protein LolA.
       0.537
EKY00034.1
Hypothetical protein.
       0.505
EKY03084.1
KEGG: spn:SP_1402 1.7e-53 NOL1/NOP2/sun family protein; K00599; Psort location: Cytoplasmic, score: 9.26.
 
  
 0.435
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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