Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EKX99830.1KEGG: cyb:CYB_1515 1.4e-30 TPR repeat-containing protein kinase; K08884 serine/threonine protein kinase, bacterial. (656 aa)    
Predicted Functional Partners:
ribBA
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.910
EKY03866.1
KEGG: cyb:CYB_1515 9.2e-06 TPR repeat-containing protein kinase; K08884 serine/threonine protein kinase, bacterial.
 
 
0.732
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
    0.709
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
  
   0.691
EKX98405.1
Tetratricopeptide repeat protein; KEGG: rba:RB12434 0.00048 ogt; O-GlcNAc transferase; Psort location: Extracellular, score: 9.64.
 
     0.680
EKX99833.1
Sporulation and cell division repeat protein; KEGG: bha:BH1294 0.0032 cwlC; N-acetylmuramoyl-L-alanine amidase (sporulation mother cell wall hydrolase) K01448; Psort location: Periplasmic, score: 9.83.
 
     0.668
EKY03269.1
Tetratricopeptide repeat protein; KEGG: tet:TTHERM_00391570 1.7e-09 DNA polymerase family B containing protein K02350; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.637
EKX99519.1
Hypothetical protein; KEGG: isc:IscW_ISCW020384 0.00045 trichohyalin, putative.
  
     0.637
EKX96155.1
Tetratricopeptide repeat protein; KEGG: tet:TTHERM_00391570 2.2e-10 DNA polymerase family B containing protein K02350.
 
  
  0.623
EKX99832.1
RNAse H domain protein, YqgF family; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
       0.610
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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