Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EKX99863.1RNA methyltransferase, RsmE family; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. (242 aa)    
Predicted Functional Partners:
EKX99860.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.825
EKX99861.1
KEGG: ppr:PBPRB1124 1.4e-19 putative ABC transporter, ATP-binding protein; K09810 lipoprotein-releasing system ATP-binding protein; Psort location: CytoplasmicMembrane, score: 7.88.
       0.825
EKX99862.1
Hypothetical protein.
       0.825
EKX99864.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.825
EKX99865.1
KEGG: eci:UTI89_C3355 8.0e-104 nupG; transport of nucleosides, permease protein K03289; Psort location: CytoplasmicMembrane, score: 10.00.
       0.825
EKX99539.1
KEGG: pmz:HMPREF0659_A6874 6.5e-70 prmA; ribosomal protein L11 methyltransferase K02687; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.635
EKY03084.1
KEGG: spn:SP_1402 1.7e-53 NOL1/NOP2/sun family protein; K00599; Psort location: Cytoplasmic, score: 9.26.
  
  
 0.459
rsmI
S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
 
   
 0.444
EKX99534.1
DnaJ domain protein; KEGG: tgo:TGME49_017710 0.00023 DnaJ domain-containing protein; Psort location: CytoplasmicMembrane, score: 7.88.
  
   0.418
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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