Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKX99749.1Site-specific recombinase, phage integrase family; KEGG: apb:SAR116_1915 0.0039 tyrosine recombinase XerD K04763; Psort location: Cytoplasmic, score: 8.96; Belongs to the 'phage' integrase family. (407 aa)    
Predicted Functional Partners:
EKX95912.1
DNA binding domain, excisionase family.
  
     0.752
EKY02018.1
Hypothetical protein.
  
     0.630
EKY04057.1
SusD family protein.
  
     0.613
EKY02086.1
Zinc-dependent metalloproteinase lipoprotein, BF0631 family; Psort location: OuterMembrane, score: 9.52.
  
     0.590
EKY03884.1
Pyruvate synthase; KEGG: pmz:HMPREF0659_A5561 0. nifJ; pyruvate synthase K03737; Psort location: Cytoplasmic, score: 8.96.
     
  0.548
EKY02017.1
Hypothetical protein.
  
     0.526
EKY03134.1
Tetratricopeptide repeat protein.
  
     0.522
EKY03574.1
Ser/Thr phosphatase family protein; KEGG: cdu:CD36_18450 7.2e-24 calcineurin-like phosphoesterase, putative.
  
     0.508
EKX99758.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.483
EKY00028.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.475
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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