STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKX99760.1Divergent AAA domain protein; KEGG: bth:BT_4530 2.6e-153 ATP-dependent DNA helicase RecG; K03655 ATP-dependent DNA helicase RecG; Psort location: Cytoplasmic, score: 8.96. (485 aa)    
Predicted Functional Partners:
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
     
  0.592
EKX99758.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.462
EKX99754.1
Helicase protein; KEGG: hvo:HVO_1598 3.2e-12 rad25c; DNA repair helicase RAD25; Psort location: Cytoplasmic, score: 8.96.
       0.449
EKX99756.1
RecF/RecN/SMC protein; KEGG: fnu:FN0522 7.9e-16 exonuclease SBCC K03546; Psort location: Cytoplasmic, score: 8.96.
       0.449
EKX99759.1
Hypothetical protein; KEGG: hth:HTH_0307 5.1e-12 stpK; serine/threonine protein kinase; K08884 serine/threonine protein kinase, bacterial; Psort location: Cytoplasmic, score: 8.96.
       0.441
vapC
PIN domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.432
EKX99750.1
DNA-binding helix-turn-helix protein.
       0.423
EKX99755.1
Hypothetical protein.
       0.404
EKX99757.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.404
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.