Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EKX99623.1UvrD/REP helicase. (1081 aa)    
Predicted Functional Partners:
EKX99624.1
Hypothetical protein; KEGG: sde:Sde_2004 6.3e-06 DNA helicase/exodeoxyribonuclease V, subunit B; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.977
EKY02854.1
Hypothetical protein.
  
 0.715
EKY04279.1
Hypothetical protein; KEGG: edi:EDI_341030 6.1e-15 intracellular protein transport protein USO1; Psort location: Cytoplasmic, score: 8.96.
  
     0.646
EKY02359.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.618
EKY03873.1
Hypothetical protein; KEGG: bth:BT_3982 3.0e-136 exonuclease V subunit alpha; K01144 exodeoxyribonuclease V; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.587
EKX98595.1
KEGG: gfo:GFO_2227 9.4e-11 LysM domain-containing proteins K01423.
  
     0.568
EKX97112.1
UvrD/REP helicase; KEGG: pmz:HMPREF0659_A6530 7.0e-208 UvrD/REP helicase K03657; Psort location: Cytoplasmic, score: 9.97.
    
 0.558
EKX96132.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.491
EKY00031.1
3'-5' exonuclease; KEGG: pmz:HMPREF0659_A6957 9.1e-64 3'-5' exonuclease; Psort location: Cytoplasmic, score: 8.96.
  
     0.471
recX
Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family.
  
   
 0.453
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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