Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EKX99558.1TonB-dependent receptor. (905 aa)    
Predicted Functional Partners:
EKX99559.1
SusD family protein.
 
     0.946
EKY03134.1
Tetratricopeptide repeat protein.
  
     0.730
EKY02018.1
Hypothetical protein.
  
     0.644
EKY02029.1
Hypothetical protein.
  
     0.581
EKY02420.1
Hypothetical protein.
  
     0.561
EKX99557.1
FMN-binding domain protein; KEGG: cpy:Cphy_3885 0.0014 flavocytochrome c; K00244 fumarate reductase flavoprotein subunit.
       0.553
EKY04057.1
SusD family protein.
  
     0.552
EKY02038.1
Hypothetical protein; KEGG: cja:CJA_0006 0.00056 amy13G; alpha-amylase, putative, amy13G; Psort location: Periplasmic, score: 9.84.
  
 
   0.547
EKY00565.1
SusD family protein.
  
     0.544
EKY02098.1
Radical SAM domain protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.535
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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