STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EKX99559.1SusD family protein. (543 aa)    
Predicted Functional Partners:
atpE
ATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
 0.967
EKX99558.1
TonB-dependent receptor.
 
     0.946
EKY03134.1
Tetratricopeptide repeat protein.
  
     0.731
EKY02029.1
Hypothetical protein.
  
    0.653
EKY02420.1
Hypothetical protein.
  
     0.604
EKY02038.1
Hypothetical protein; KEGG: cja:CJA_0006 0.00056 amy13G; alpha-amylase, putative, amy13G; Psort location: Periplasmic, score: 9.84.
 
     0.598
EKY02018.1
Hypothetical protein.
  
     0.592
EKY00564.1
TonB-dependent receptor plug domain protein.
 
     0.572
EKY02098.1
Radical SAM domain protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.569
EKX98443.1
PAP2 family protein; KEGG: nca:Noca_2059 0.0019 undecaprenyl-diphosphatase K06153; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
   0.548
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.