STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKX99571.1Sigma-70 region 2; KEGG: reh:H16_A1096 5.8e-14 rpoE3; DNA-directed RNA polymerase sigma subunit (RpoE,sigma24) K03088; Psort location: CytoplasmicMembrane, score: 9.82; Belongs to the sigma-70 factor family. ECF subfamily. (198 aa)    
Predicted Functional Partners:
EKY03526.1
KEGG: shn:Shewana3_0763 1.3e-14 ECF subfamily RNA polymerase sigma-24 factor K03088; Psort location: Cytoplasmic, score: 9.26; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.767
EKY02104.1
Sigma-70 region 2; KEGG: ctu:Ctu_31640 2.5e-09 rpoE; RNA polymerase sigma factor RpoE K03088; Psort location: Cytoplasmic, score: 9.26; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.745
EKX98341.1
Sigma-70 region 2; KEGG: reh:H16_A2563 2.4e-15 rpoE1; RNA polymerase sigma factor RpoE K03088; Psort location: Cytoplasmic, score: 9.97; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.733
EKY02028.1
Sigma-70 region 2; KEGG: bpu:BPUM_0902 5.4e-11 sigM; RNA polymerase sigma factor SigM K03088; Psort location: Cytoplasmic, score: 9.97; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.684
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.541
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.533
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.509
EKY02991.1
RNA polymerase sigma-70 factor; KEGG: chu:CHU_3562 1.1e-14 rpoE; ECF subfamily RNA polymerase sigma factor K03088; Psort location: Cytoplasmic, score: 9.97; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.502
EKX99572.1
Citrate transporter; Psort location: CytoplasmicMembrane, score: 10.00.
       0.429
EKY03892.1
Hypothetical protein; KEGG: tte:TTE1510 7.1e-05 rpoZ; DNA-directed RNA polymerase subunit omega K03060.
    
   0.406
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.