Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKX99583.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00. (337 aa)    
Predicted Functional Partners:
EKX99584.1
KEGG: pmz:HMPREF0659_A5946 3.7e-90 pdxA; pyridoxal phosphate biosynthetic protein PdxA; K00097 4-hydroxythreonine-4-phosphate dehydrogenase; Psort location: Cytoplasmic, score: 9.97.
       0.825
EKX99585.1
Hypothetical protein.
       0.825
EKX99586.1
23S rRNA methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs.
       0.825
EKY03305.1
Hypothetical protein; KEGG: lxx:Lxx21650 0.0090 signal peptidase I; K13280 signal peptidase, endoplasmic reticulum-type.
  
     0.719
EKY03427.1
Hypothetical protein.
 
     0.692
EKX96154.1
Hypothetical protein.
  
     0.670
EKX99649.1
Hypothetical protein.
  
     0.668
EKY02332.1
Hypothetical protein.
  
     0.658
EKY03306.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.655
EKY04288.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.643
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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