STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKX99513.1Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (229 aa)    
Predicted Functional Partners:
EKX98167.1
Helicase protein; KEGG: lsp:Bsph_0793 3.8e-17 ATP-dependent helicase YqhH; Psort location: Cytoplasmic, score: 8.96.
  
 0.977
EKX99633.1
Respiratory-chain NADH dehydrogenase, subunit.
   
   0.946
EKY02866.1
Hypothetical protein.
   
  0.829
EKY01607.1
Hypothetical protein; KEGG: azo:azo0358 0.00018 putative two-component sensor kinase K00936; Psort location: Cytoplasmic, score: 8.96.
   
 0.829
EKX99492.1
Phage tail component protein; KEGG: eci:UTI89_C0501 2.0e-68 htpG; heat shock protein 90 K04079; Psort location: Cytoplasmic, score: 9.97.
   
 0.829
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 0.820
rplN
Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
   
   0.755
EKX99514.1
KEGG: pmz:HMPREF0659_A5785 2.5e-139 putative cytochrome d ubiquinol oxidase, subunit II; K00426 cytochrome bd-I oxidase subunit II; Psort location: CytoplasmicMembrane, score: 10.00.
       0.754
EKX97096.1
DEAD/DEAH box helicase; KEGG: sth:STH1647 4.8e-74 ATP-dependent RNA helicase; K05592 ATP-dependent RNA helicase DeaD; Psort location: Cytoplasmic, score: 9.97; Belongs to the DEAD box helicase family.
  
 
 0.747
rplB
Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
   
   0.746
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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