Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKX99528.1TonB-dependent receptor; KEGG: hiq:CGSHiGG_06875 0.00017 selenocysteine synthase; Psort location: OuterMembrane, score: 10.00. (721 aa)    
Predicted Functional Partners:
EKX96110.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.741
EKX99527.1
Hypothetical protein.
       0.653
EKX96096.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.594
EKY00732.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
  
     0.571
EKX99530.1
Hypothetical protein.
  
     0.566
EKX97277.1
TonB-dependent receptor plug domain protein.
  
     0.566
EKY00791.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.496
EKX98167.1
Helicase protein; KEGG: lsp:Bsph_0793 3.8e-17 ATP-dependent helicase YqhH; Psort location: Cytoplasmic, score: 8.96.
  
     0.485
EKX98168.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.474
EKX99529.1
Hypothetical protein.
       0.436
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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