Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKX99538.1DNA-binding helix-turn-helix protein. (155 aa)    
Predicted Functional Partners:
EKX95889.1
Hypothetical protein.
  
     0.673
EKX98405.1
Tetratricopeptide repeat protein; KEGG: rba:RB12434 0.00048 ogt; O-GlcNAc transferase; Psort location: Extracellular, score: 9.64.
  
     0.639
EKX99292.1
Hypothetical protein.
  
     0.617
EKX99519.1
Hypothetical protein; KEGG: isc:IscW_ISCW020384 0.00045 trichohyalin, putative.
  
     0.587
EKY02901.1
Hypothetical protein.
  
     0.536
EKX96754.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.483
EKY00982.1
Hypothetical protein.
  
     0.420
EKX99613.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.410
EKY02945.1
Hypothetical protein; KEGG: pgn:PGN_1645 1.7e-14 putative dipeptidyl-peptidase III; K01277 dipeptidyl-peptidase III; Psort location: Cytoplasmic, score: 8.96.
  
     0.406
EKX95919.1
Hypothetical protein.
  
     0.403
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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