Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKX99540.1Hypothetical protein; KEGG: dgr:Dgri_GH22875 0.0016 GH22875 gene product from transcript GH22875-RA; K11594 ATP-dependent RNA helicase; Psort location: OuterMembrane, score: 9.49. (306 aa)    
Predicted Functional Partners:
EKX99541.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.52.
       0.727
EKX99539.1
KEGG: pmz:HMPREF0659_A6874 6.5e-70 prmA; ribosomal protein L11 methyltransferase K02687; Psort location: Cytoplasmic, score: 9.97.
       0.582
infC
Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.
       0.412
rpmI
Ribosomal protein L35; Psort location: Cytoplasmic, score: 9.26; Belongs to the bacterial ribosomal protein bL35 family.
       0.412
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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