Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EKX99321.1KEGG: pru:PRU_0554 1.6e-215 RecQ family ATP-dependent DNA helicase; K03654 ATP-dependent DNA helicase RecQ; Psort location: Cytoplasmic, score: 9.97. (636 aa)    
Predicted Functional Partners:
EKX96911.1
KEGG: pmz:HMPREF0659_A6179 3.6e-298 recQ; ATP-dependent DNA helicase RecQ K03654; Psort location: Cytoplasmic, score: 9.97.
  
  
 
0.935
EKX98920.1
Putative cold-shock DEAD-box protein A; KEGG: pmz:HMPREF0659_A5094 2.0e-242 putative ATP-dependent RNA helicase DeaD; K05592 ATP-dependent RNA helicase DeaD; Psort location: Cytoplasmic, score: 9.97; Belongs to the DEAD box helicase family.
  
 
0.897
EKX97112.1
UvrD/REP helicase; KEGG: pmz:HMPREF0659_A6530 7.0e-208 UvrD/REP helicase K03657; Psort location: Cytoplasmic, score: 9.97.
  
 0.865
EKX99322.1
KEGG: pmz:HMPREF0659_A5960 1.2e-258 recJ; single-stranded-DNA-specific exonuclease RecJ K07462; Psort location: Cytoplasmic, score: 9.97.
   
 0.858
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.839
EKX98167.1
Helicase protein; KEGG: lsp:Bsph_0793 3.8e-17 ATP-dependent helicase YqhH; Psort location: Cytoplasmic, score: 8.96.
  
 0.827
EKX99756.1
RecF/RecN/SMC protein; KEGG: fnu:FN0522 7.9e-16 exonuclease SBCC K03546; Psort location: Cytoplasmic, score: 8.96.
   
 0.722
EKX98744.1
Tetratricopeptide repeat domain protein; KEGG: dre:326729 6.6e-45 pif1, cb934, fe11d03, wu:fe11d03, zgc:56161; PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae) K01529; Psort location: Cytoplasmic, score: 8.96.
    
   0.702
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
   
 0.702
EKY02331.1
KEGG: phe:Phep_1011 4.6e-76 DEAD/DEAH box helicase domain protein; K05591 ATP-independent RNA helicase DbpA; Psort location: Cytoplasmic, score: 9.97.
  
 
0.687
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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