Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKX99292.1Hypothetical protein. (52 aa)    
Predicted Functional Partners:
rpmB
Ribosomal protein L28; KEGG: apb:SAR116_1905 1.3e-07 LSU ribosomal protein L28P K02902; Psort location: Cytoplasmic, score: 9.26; Belongs to the bacterial ribosomal protein bL28 family.
   
   0.934
rpmG
Ribosomal protein L33; KEGG: apb:SAR116_0619 0.0037 ribosomal protein L33 K02913; Belongs to the bacterial ribosomal protein bL33 family.
   
   0.934
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
 
   0.713
rpmJ
Ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
  
 
   0.713
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
  
 
   0.707
rpmA
Ribosomal protein L27; KEGG: apb:SAR116_1855 4.3e-25 ribosomal protein L27 K02899; Psort location: Cytoplasmic, score: 9.26; Belongs to the bacterial ribosomal protein bL27 family.
    
   0.670
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
    
   0.670
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
    
   0.670
rpsB
Ribosomal protein S2; KEGG: apb:SAR116_0519 1.1e-53 ribosomal protein S2 K02967; Psort location: Cytoplasmic, score: 9.97; Belongs to the universal ribosomal protein uS2 family.
    
   0.670
rpsI
Ribosomal protein S9; KEGG: apb:SAR116_0492 2.7e-25 ribosomal protein S9 K02996; Psort location: Cytoplasmic, score: 9.26; Belongs to the universal ribosomal protein uS9 family.
    
   0.670
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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