Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKX99210.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (183 aa)    
Predicted Functional Partners:
EKX99211.1
KEGG: shn:Shewana3_3590 1.3e-18 single-strand binding protein K03111; Psort location: Cytoplasmic, score: 9.97.
       0.787
EKX99212.1
Gliding motility-associated protein GldE; KEGG: apb:SAR116_1911 6.1e-42 CBS domain protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.753
EKX99213.1
Hypothetical protein; KEGG: fps:FP0188 3.7e-12 sfp; phosphopantetheinyl transferase; Psort location: Cytoplasmic, score: 8.96.
       0.721
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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