STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKX98910.1KEGG: pmz:HMPREF0659_A7207 7.8e-74 ribF; riboflavin biosynthesis protein RibF K11753; Psort location: Cytoplasmic, score: 9.97. (311 aa)    
Predicted Functional Partners:
EKY04293.1
KEGG: pru:PRU_1369 8.2e-79 ribE; riboflavin synthase subunit alpha K00793; Psort location: Cytoplasmic, score: 9.97.
    
 0.933
EKX98909.1
KEGG: fjo:Fjoh_0002 3.0e-17 HAD family hydrolase; K01560 2-haloacid dehalogenase; Psort location: Cytoplasmic, score: 8.96.
  
 
  0.873
EKX98908.1
Calcium-translocating P-type ATPase, PMCA-type; KEGG: bfs:BF4149 8.1e-246 putative transmembrane calcium-transporting ATPase K01537; Psort location: CytoplasmicMembrane, score: 10.00.
       0.825
EKX98911.1
KEGG: bmq:BMQ_3109 1.4e-09 CAAX amino terminal protease family protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.813
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
 
  
 0.811
cmk
Cytidylate kinase; KEGG: pru:PRU_1828 2.6e-91 cmk; cytidylate kinase K00945; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.809
ribBA
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
 0.771
EKX98134.1
Nitroreductase family protein; KEGG: bth:BT_2144 1.3e-80 putative oxidoreductase; K00540; Belongs to the flavin oxidoreductase frp family.
    
 0.744
coaD
Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
 
   
 0.735
EKX99524.1
KEGG: pmz:HMPREF0659_A7159 5.4e-153 trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.713
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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