STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fucIArabinose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose. (595 aa)    
Predicted Functional Partners:
EKX97247.1
Putative rhamnulokinase.
 
 
 0.859
EKX96715.1
Kinase, PfkB family; KEGG: pmz:HMPREF0659_A5128 3.8e-113 kinase, PfkB family; K00847 fructokinase; Psort location: Cytoplasmic, score: 8.96.
     
  0.649
araB
Ribulokinase; KEGG: tcr:508625.150 9.5e-172 L-ribulokinase; K00853 L-ribulokinase; Psort location: Cytoplasmic, score: 9.97.
    
  0.631
EKY00064.1
Nucleotide sugar dehydrogenase; KEGG: pru:PRU_1313 1.2e-189 UDP-glucose 6-dehydrogenase K00012.
     
  0.626
EKX98760.1
Hypothetical protein.
 
     0.621
EKX98761.1
TonB-dependent receptor; Psort location: OuterMembrane, score: 9.49.
       0.402
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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